PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G222700.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 450aa    MW: 50282.5 Da    PI: 5.0048
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G222700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.1e-103504183199
                         .--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  31 eesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         +es t+tle   ++++W+ ++     +++++l+++W +F  +n+++e D++vF   ++ ++ +++v+++++
  Brast08G222700.3.p 350 HESGTVTLEVpGKSEKWQPRF--FVEKDACMLAGNWLDFICDNQVQEEDICVFVPAKEeEKSKFMVHIISA 418
                         45669999995566*******..88888899***********************8877799999**99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.59E-12312417IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-12312418IPR015300DNA-binding pseudobarrel domain
CDDcd100175.10E-11318417No hitNo description
PROSITE profilePS508638.727319419IPR003340B3 DNA binding domain
PfamPF023621.6E-8349418IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MKYYTAKWAS GAASVQRGFG ISCGVLHLDS RAVLTPTTGN TIDLDYLWAF EDMSAVQDLD  60
WAGHITEHLM EEVRKFQFKS REEKMTDFWV GGCLPLLMIA YMDHLDLPRG RIVDREINYS  120
IPRICHVSKD DFQFTAIADL NRQHYKFATF GILPFRDRTP YNDNPIIEET EVAEDDLHIP  180
SKDYVISGQW ELEAHEERIY ELGQGIQPEI LAFAEASIDN SLHGRNGVGS NQGSKRFASC  240
ERGSSSHCRN TAKAAVTTPS SEESGEHSAQ EYESSESDDH TTPPEADYGV IFRNCLSGAQ  300
IEKVNTLIRK VQPGTVVFVA TMRKCDVQLP SPLLIVSKER ALAAAARFPH ESGTVTLEVP  360
GKSEKWQPRF FVEKDACMLA GNWLDFICDN QVQEEDICVF VPAKEEEKSK FMVHIISAEA  420
TRSRGVKRAR SSHDSPVVVD EQTANPGVV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231769.10.0PREDICTED: uncharacterized protein LOC100837372 isoform X1
TrEMBLI1HMC40.0I1HMC4_BRADI; Uncharacterized protein
STRINGBRADI2G37387.10.0(Brachypodium distachyon)